PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100254390022

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

M-type_MADS

Protein Properties

Length: 222aa MW: 24646 Da PI: 5.8791

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100254390022	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.7	3.5e-24	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n + rq t++kR+ gi+KKA+ELSvLCd++va+i+fs++g+l ++s Ote100254390022\|100254390022 10 RIDNPTSRQLTYAKRKDGIIKKASELSVLCDTDVALIMFSPSGRLTSFAS 59 8*********************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.3E-33	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.997	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-26	2	75	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-22	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-22	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-22	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-22	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MGRKKLAMRR IDNPTSRQLT YAKRKDGIIK KASELSVLCD TDVALIMFSP SGRLTSFASN 60 GRIEDIFLRF VDRPDELRGG PINHEEFLSQ KLKQLKYEGG MLEKIAMYYD PNVEKINSAL 120 EAGVYQQFLT SAIQRMQCSK AKLLGNQLVA ERTENVEVQA ATIQMDDATS ITDQSVEGNQ 180 NGMNSTMDES GTSLAAGAGP HLSLGFIEAQ RLWNKCGPLD DY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	1e-15	1	82	1	83	MEF2 CHIMERA
6bz1_B	1e-15	1	82	1	83	MEF2 CHIMERA
6bz1_C	1e-15	1	82	1	83	MEF2 CHIMERA
6bz1_D	1e-15	1	82	1	83	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549788.1	1e-112	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	6e-28	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A2G9HBM0	1e-111	A0A2G9HBM0_9LAMI; MADS box transcription factor
STRING	Migut.H01211.1.p	3e-97	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5292	18	36

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]