PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100254650041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YC

Protein Properties

Length: 198aa MW: 22358.6 Da PI: 9.4632

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100254650041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	45.2	2.1e-14	18	99	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 + ++P r+kki+k d+d++++ +ea l++ + elf+ l+ +s a e+kr+t+ i a +r + dfl+d p+ Ote100254650041\|100254650041 18 KLDIPTGRVKKIMKLDKDISKVNSEALFLVASSTELFLQFLAEKSAHVALEQKRKTISIEHIRLAAKRHRpTADFLLDSLPK 99 55799*******************************************************98888764389***9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.09E-19	17	105	IPR009072	Histone-fold
Pfam	PF00808	4.4E-18	21	82	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.2E-20	22	99	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MTEQEGGENP TAIDEPHKLD IPTGRVKKIM KLDKDISKVN SEALFLVASS TELFLQFLAE 60 KSAHVALEQK RKTISIEHIR LAAKRHRPTA DFLLDSLPKP PQPVERNPPG DRSKSRSDKK 120 PVPFATRSID AXXXXXXLSK VYLDLLVLSF DILSLYRPCL CYLDTQIQLV SIATFPTLKL 180 MRLFLFGDKF TETVNAVL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086780.2	7e-64	nuclear transcription factor Y subunit gamma isoform X1
Refseq	XP_011086781.2	7e-64	nuclear transcription factor Y subunit gamma isoform X2
TrEMBL	A0A2G9GVN9	2e-66	A0A2G9GVN9_9LAMI; Uncharacterized protein
STRING	Migut.K00728.1.p	5e-63	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11435	24	25