PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100255190041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 538aa    MW: 59097.5 Da    PI: 5.159
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100255190041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.81.3e-7725252578361
                          GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeel 158
                                   + a+k fse+sP+++f+++t+NqaIle ++g +r+Hi+Dfdi++G+QW++L+q+La R +g+ sl+iT+++s++++++ el
  Ote100255190041|100255190041 252 IGAYKSFSEISPLVQFANFTCNQAILEVLDGFDRIHIVDFDIGYGGQWASLMQELALRGGGALSLKITALASSSTHDQLEL 332
                                   6799***************************************************************************** PP

                          GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                                     t+e+L +fA+e++++fef+++ + + ++   ++L  +v+++E +aVnl +   +l ++++s++     +L+lvk+lsP+
  Ote100255190041|100255190041 333 GLTRENLIQFASEINITFEFEAI-SIDSSNSGSWSLpfHVQENEGVAVNLPV--GSLANHQLSVPL----ILRLVKQLSPR 406
                                   **********************6.555666667777558899********99..556655666666....*********** PP

                          GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                                   +vv v++ +d+++ +F++++++al+ ys l++sl+a    + ++ +k+Er+ll++ i+++v+ + ++     e+ ++Wr+ 
  Ote100255190041|100255190041 407 IVVSVDRGCDRTDLPFANHIVHALQSYSNLLESLDAV-NVNMDALQKIERFLLQPGIEKIVMGRVRS----PEKTQHWRAL 482
                                   **********************************665.4577999*****************98887....9********* PP

                          GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                                   + ++GF+p+++s+++++qa++++++++++g++ve+++ slvl+
  Ote100255190041|100255190041 483 FLSSGFSPITFSNFTESQAECVIKRTPVRGFQVEKRQSSLVLC 525
                                   ******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.417160518IPR005202Transcription factor GRAS
PfamPF035144.4E-75252525IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MEDWESVLSD SAAAASPSQE QAFLRWVMGD VEDPAMGNLN KVLQIGGGGA AAPEFDFSGG  60
FGVVDQGFGG DQFGSSFMPT LPNFPNRSTA EKIACIRFLC RNEAPHFQSP SAHKPAPNAA  120
PSQPLFLLPL RAELXXXXXX XXXXXXXXXX XXXXXXTQIS KGPFTDTGQQ EMFMGRQQLQ  180
LLPHYLQQRP MGQKPKIGGG AADDCHQLQQ QAIVDQLYKA AELVQTGNPV LAQGILARLN  240
HQXXXXXSLP LIGAYKSFSE ISPLVQFANF TCNQAILEVL DGFDRIHIVD FDIGYGGQWA  300
SLMQELALRG GGALSLKITA LASSSTHDQL ELGLTRENLI QFASEINITF EFEAISIDSS  360
NSGSWSLPFH VQENEGVAVN LPVGSLANHQ LSVPLILRLV KQLSPRIVVS VDRGCDRTDL  420
PFANHIVHAL QSYSNLLESL DAVNVNMDAL QKIERFLLQP GIEKIVMGRV RSPEKTQHWR  480
ALFLSSGFSP ITFSNFTESQ AECVIKRTPV RGFQVEKRQS SLVLCDLTFA EDSCILLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2624852492365Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022852131.10.0scarecrow-like protein 22 isoform X2
SwissprotO813161e-116SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2G9GWL50.0A0A2G9GWL5_9LAMI; Uncharacterized protein
STRINGXP_009762628.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62532235
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]