PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100256430051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YB
Protein Properties Length: 251aa    MW: 27517.8 Da    PI: 8.264
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100256430051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.13.1e-5454149297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   re+drflPian++rimkk+lP naki+kdak+tvqecvsefisf+tseasdkc +ekrkt+ngddllw+++tlGfe+y++p
  Ote100256430051|100256430051  54 REHDRFLPIANIGRIMKKALPPNAKIAKDAKDTVQECVSEFISFITSEASDKCLKEKRKTVNGDDLLWSMGTLGFEEYINP 134
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk+yl++yr+leg++
  Ote100256430051|100256430051 135 LKIYLSRYRQLEGDT 149
                                   *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-5050161IPR009072Histone-fold
SuperFamilySSF471134.81E-3857158IPR009072Histone-fold
PfamPF008081.4E-2659123IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.3E-1987105No hitNo description
PROSITE patternPS00685090106IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.3E-19106124No hitNo description
PRINTSPR006157.3E-19125143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKEYYCCSAX XXXXXXXXXX ICGARVSLLG ETMADSPGGA DGGGGDLSPQ SNSREHDRFL  60
PIANIGRIMK KALPPNAKIA KDAKDTVQEC VSEFISFITS EASDKCLKEK RKTVNGDDLL  120
WSMGTLGFEE YINPLKIYLS RYRQLEGDTK GPARGADGST KKDMTVAQLG SDAQMITDLS  180
VVSLMREEFV SGYCVTLATI ARFCRFEFLI LGGRVSQGKS RQKLPLALLA GEIIQTSFSL  240
RSINRYVAHS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4354144292Transcription factor HapC (Eurofung)
4g92_B4e-4354144292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028103481.11e-74nuclear transcription factor Y subunit B-1-like
RefseqXP_028122302.12e-74nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK47e-65NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0N6X6V53e-77A0A0N6X6V5_SALMI; Transcription factor NFYB
STRINGVIT_13s0019g03600.t016e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]