PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100256600001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

ERF

Protein Properties

Length: 49aa MW: 5522.44 Da PI: 11.5951

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100256600001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.2	1.5e-16	2	44	10	55
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Ote100256600001\|100256600001 2 RNWGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 44 57********843...6*********************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	18.255	1	49	IPR001471	AP2/ERF domain
SMART	SM00380	2.5E-18	1	49	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-24	1	49	IPR001471	AP2/ERF domain
CDD	cd00018	3.22E-22	1	49	No hit	No description
Pfam	PF00847	5.1E-11	2	44	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.83E-16	2	48	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 49 aa Download sequence Send to blast
MRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGASATL

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091185.1	8e-28	ethylene-responsive transcription factor TINY
Swissprot	Q9LYD3	1e-26	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A4D8Z3V2	1e-26	A0A4D8Z3V2_SALSN; EREBP-like factor
TrEMBL	A0A4D9AKP5	2e-26	A0A4D9AKP5_SALSN; EREBP-like factor
STRING	Bra008952.1-P	2e-26	(Brassica rapa)
STRING	Bo9g170060.1	2e-26	(Brassica oleracea)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]