PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100256990021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 965aa    MW: 107098 Da    PI: 5.0248
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100256990021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-112563948
                                  HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  de+l  av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Ote100256990021|100256990021 25 DEILRLAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 63
                                  7999*******************9.************986 PP
2Myb_DNA-binding61.71.5e-1969115148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+W++eEde  +++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Ote100256990021|100256990021  69 KGPWSKEEDEVMIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 115
                                   79******************************.*************97 PP
3Myb_DNA-binding47.15.6e-15121163145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   + +WT+eE++ l++a++  G++ W+   + ++ gRt++++k++w+
  Ote100256990021|100256990021 121 KEAWTQEEELALIRAHQICGNK-WAELTKFLP-GRTDNSIKNHWN 163
                                   579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.2E-61565IPR001005SANT/Myb domain
SuperFamilySSF466893.95E-112573IPR009057Homeodomain-like
PfamPF002494.3E-92563IPR001005SANT/Myb domain
PROSITE profilePS500907.1662563IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-162570IPR009057Homeodomain-like
CDDcd001679.35E-92563No hitNo description
PROSITE profilePS5129432.52264119IPR017930Myb domain
SuperFamilySSF466892.7E-3166162IPR009057Homeodomain-like
SMARTSM007171.6E-1768117IPR001005SANT/Myb domain
PfamPF002491.2E-1769115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2871118IPR009057Homeodomain-like
CDDcd001677.49E-1671115No hitNo description
Gene3DG3DSA:1.10.10.603.7E-21119170IPR009057Homeodomain-like
PROSITE profilePS5129418.947120170IPR017930Myb domain
SMARTSM007172.4E-14120168IPR001005SANT/Myb domain
PfamPF002493.7E-13121164IPR001005SANT/Myb domain
CDDcd001674.39E-11123163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MRVEPIGWGL SISVAGLEFS ELRSDEILRL AVQRFKGKNW KKIAECFKDR TDVQCLHRWQ  60
KVLNPDLVKG PWSKEEDEVM IELVNKYGPK KWSTIAQHLP GRIGKQCRER WHNHLNPNIN  120
KEAWTQEEEL ALIRAHQICG NKWAELTKFL PGRTDNSIKN HWNSSVKKKL DMYLASGLLS  180
QYQGPPPISH LSHSAASSST KAQRSSKEEK DGAEVEEASG CSQGSILASI SQSVNNTVNI  240
IDHRGDDCGK TETPEAPCEL DAKFVEHNLS LDWETIAGKD WQVNTNEDMS TLDLGQESSG  300
LFMPSLTGKE NHNVIPFPTE TYMRLDDSVS IVNMDVGSGS PNRLTNADCN TVYREVGHDG  360
CLTENVIFDF HEPEDPSVHN DSNYEMPCVP SDMLGASSTQ ATYVCAQLPP DDFPSILSTY  420
PDQSTYSRHV SGEHESISPG TLDGFVYANI SNCSPCEDNF DEASRSSNLV PANDFVLEPS  480
DDLKCGSSKD EDSVEEKDTG ALFYEPPRFP SLDIPFFSCD LIQSGSDMHQ EYSPLGIRQL  540
MMSSMTPFQL WESPSRDDSP VAVLKSAAKS FTCTPSILRK RHRDLLSPLS EKRDAKKLGG  600
CHKAESFSNP TNEISCLDVI FYECTEKQKS PNSKGGFIEK ENVALVPEQE KNVGNESLFV  660
SRSKISQKDN NFSNSAEKQT EQTVVEDIKT NPVGKDVKDK ATELSGILVE HDMNDMLFFS  720
PDRFGVEVDR TIGRSAKSLG NQYTRRIESV SKPGAILSSA ETSCFPVLCS PRLCTKKDDT  780
SLRIATSLQS LSPSEKKAKH SGKCISSENN GMYVETPFKR SIESPSAWKS PWFVNTFAPG  840
PRVNNDIDIE DIGYFFSPGD QSYDAIGLMK QLGEQTADTF ADAQEVLGDE TPESLLKGKC  900
ITKGEKENSC TPNTRGDHSL LHSRLMTERR TLDFSECGTP GKETRKLPSS SGVATPSSYL  960
LKSCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-632517014159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-632517014159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081822.10.0transcription factor MYB3R-1
RefseqXP_011081823.10.0transcription factor MYB3R-1
RefseqXP_020550835.10.0transcription factor MYB3R-1
TrEMBLA0A0K1SB810.0A0A0K1SB81_REHGL; 3R MYB protein
STRINGMigut.A00232.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448