PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100257030021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WOX

Protein Properties

Length: 244aa MW: 27684.2 Da PI: 6.0407

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100257030021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.2	9.2e-21	60	120	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps+++++e++++l +++e++V++WFqNrRa+ k+ Ote100257030021\|100257030021 60 RQRWTPTPMQLQILERIFDQgIGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 120 89***************99************************************97 PP
2	Wus_type_Homeobox	104	1e-33	60	122	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Ote100257030021\|100257030021 60 RQRWTPTPMQLQILERIFDQGIGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 122 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-17	55	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.463	56	121	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-18	58	124	IPR009057	Homeodomain-like
SMART	SM00389	5.5E-14	58	125	IPR001356	Homeobox domain
CDD	cd00086	6.63E-13	60	122	No hit	No description
Pfam	PF00046	1.4E-18	60	120	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MTDEQMEVLR KQIAVYATIC EQLVELHKSL TSQNDLAGVR LGNLYCDPLM TSSAHKITGR 60 QRWTPTPMQL QILERIFDQG IGTPSKQKIK EITSELSQHG QISETNVYNW FQNRRARSKR 120 KQQSTPANNA ESEVETEVES PNEKKTKPEE FQSQHMLPSR AEDLCFQNPQ TTSAMHSVIP 180 IISKPEPMLP AEGTSKFGGN FGQMSFYGNM LSNPRNGMEQ LIGKIEVPGN YNPYLQQDEY 240 NMDG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099896.1	1e-152	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-86	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A4D8YII2	1e-152	A0A4D8YII2_SALSN; Uncharacterized protein
STRING	XP_009777417.1	1e-131	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]