PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100257810051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 137aa    MW: 15855.3 Da    PI: 9.4642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100257810051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-201363256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+ ae+Aa+a+++a+++++g+
  Ote100257810051|100257810051 13 RYRGVRRRP-WGKWAAEIRDP-----HkaTRVWLGTFDRAEDAARAYDEAALRFRGN 63
                                  59*******.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-131362IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-231372IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-331371IPR001471AP2/ERF domain
SMARTSM003809.0E-371376IPR001471AP2/ERF domain
PROSITE profilePS5103225.1191370IPR001471AP2/ERF domain
CDDcd000181.52E-311372No hitNo description
PRINTSPR003671.0E-111425IPR001471AP2/ERF domain
PRINTSPR003671.0E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MTANQSQSTS YWRYRGVRRR PWGKWAAEIR DPHKATRVWL GTFDRAEDAA RAYDEAALRF  60
RGNKAKLNFP ENVASTSSPN PHLHAQDFAA QTRDFNMQPY SSTLFYQHPT PSDDPTVMST  120
DFSWTHSDHR PTSHDQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-231475668ATERF1
3gcc_A2e-231475668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027922026.15e-35ethylene-responsive transcription factor ABR1-like isoform X1
RefseqXP_027922028.16e-35ethylene-responsive transcription factor ABR1-like isoform X2
RefseqXP_027922029.15e-35ethylene-responsive transcription factor ERF110-like isoform X3
SwissprotP930076e-30EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A4D8Z6V45e-35A0A4D8Z6V4_SALSN; EREBP-like factor
STRINGXP_006464861.18e-34(Citrus sinensis)
STRINGXP_006427893.16e-34(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165