PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100258570031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family Trihelix
Protein Properties Length: 340aa    MW: 39831.5 Da    PI: 8.151
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100258570031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-14911413786
                      trihelix  37 kmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                                   +m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++d+++
  Ote100258570031|100258570031  91 AMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtSCRVVENQALLDSMD 141
                                   69*********************************669********99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-1269166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSGGIYSNVQ PTMLGLEMSL HHNLPSQNPP NPHHHLPKSK NQSLTLSDDE ENSCGDDGKR  60
KASPWQRMKW SDNMVRLLIM VVFYMGDEVG AMMERGFYVS PQQCEDKFND LNKRYKRVND  120
ILGKGTSCRV VENQALLDSM DLSPKMKEEV RKLLNSKHLF FREMCAYHNS CGHTDSPAEP  180
PQLHQLQQSC LHSTEKAPVM PNLNKLEKGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX KMIEELEGEM SGEGRRRWVK GKMMELEEER VGIQMQAYEL EKQRLKWIKF  300
STNKEREMER EKLLNQRMKL ENERMLLLLR RKELDLIHQS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101476.11e-115uncharacterized protein LOC105179522
TrEMBLA0A2G9GXC21e-122A0A2G9GXC2_9LAMI; Transcription factor GT-2
STRINGcassava4.1_007978m1e-101(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231