PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100259040031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 237aa MW: 27247.4 Da PI: 8.2885

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100259040031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.5	5.5e-29	75	162	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +Y++YAk+vGF vr+ + ++s+++g++++r+fvC+keg+r ++k k+++ r++ra+tr gCka+++v+kek+g w ++kle Ote100259040031\|100259040031 75 YYDAYAKRVGFIVRIGNCHRSSHDGSVISRRFVCNKEGFRVNKKVKRVEVRKPRAVTREGCKAMIMVRKEKSGCWIIAKLE 155 8*******************************************9****************************** PP FAR1 83 leHnHel 89 ++H+H+l Ote100259040031\|100259040031 156 TQHSHPL 162 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-26	75	162	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MFLSLFFLVL VVNFDPNEAA NYDKLMEVSS DICMSDGGEM INLYDEKDFS SQELPSNMEP 60 YVGMEFLSEE AAMAYYDAYA KRVGFIVRIG NCHRSSHDGS VISRRFVCNK EGFRVNKKVK 120 RVEVRKPRAV TREGCKAMIM VRKEKSGCWI IAKLETQHSH PLGILQGKIR CGPVRAQSQD 180 EKDKRIRELS SELHRTKQKL AECQKHLDTV LNDVELHVDH LTRSVQHLIQ NVKEVEK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089602.1	1e-109	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2R6QJP0	1e-106	A0A2R6QJP0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment)
STRING	Aquca_058_00091.1	2e-86	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20