PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100259270041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C3H

Protein Properties

Length: 153aa MW: 17235.4 Da PI: 8.4808

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100259270041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.4e-10	64	85	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C +f rtG+C+yG++Ck+ H++ Ote100259270041\|100259270041 64 CTRFVRTGWCQYGESCKYYHPK 85 ********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	4.1E-5	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	2.89E-15	4	50	No hit	No description
Pfam	PF06220	3.5E-10	5	38	IPR013085	Zinc finger, U1-C type
SMART	SM00356	0.0092	60	85	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.76E-7	62	87	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-8	63	85	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-5	63	85	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.15	63	86	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MPLGKYHCDY CDKQFQDTPS ARRTHLNGVS HQRAKALWYD AFLRSSQFGL DEVEGLQSIG 60 NGVCTRFVRT GWCQYGESCK YYHPKTNLSN TNAKNMEAVV FRNQMGASPG NLPPSLLPPP 120 EVAFRPIHGD DVAESNRRFW DIRIESKGVP TGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010659729.1	2e-52	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
Swissprot	Q0JP11	1e-31	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2G9I7N4	1e-55	A0A2G9I7N4_9LAMI; U1 snRNP-specific protein C
STRING	Migut.B00859.1.p	1e-49	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12008	18	21

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]