PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100259320011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 382aa    MW: 42386.6 Da    PI: 8.1348
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100259320011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP120.48.5e-38143220178
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   +CqvegC+adl  akeyhr+h+vC++hsk+p+v+v+g+e+rfCqqCsrfh l efDe+krsCrrrL++hn+rrrk+++
  Ote100259320011|100259320011 143 CCQVEGCNADLLLAKEYHRKHRVCDAHSKCPKVIVEGRERRFCQQCSRFHGLCEFDERKRSCRRRLSDHNARRRKPHQ 220
                                   6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-30137205IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.505141218IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-35142223IPR004333Transcription factor, SBP-box
PfamPF031102.6E-28144217IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSPFMEMEWN AKWDWENLAA CSKGIESPKN LQLVDWTIID DGEIHVEPFN MSAGSSAKSS  60
ISASTDSSCK KIEINGIELS GTSPTPETSV GSAEALLGLK LGKRTYFENN NGNVKSTSFS  120
VMPNPTITTP KKTRSSAQNA PICCQVEGCN ADLLLAKEYH RKHRVCDAHS KCPKVIVEGR  180
ERRFCQQCSR FHGLCEFDER KRSCRRRLSD HNARRRKPHQ ETIQFNPPRL SASFYGGTQQ  240
MNFLNNSPVV ESRALANSAW NSSRFTLTKG CSFKSDGDGV TDEIKALNMQ NGGNGFLASK  300
NPTSMVFNPV SKGSVMSLDP EYRRALSLLS SNSCGVQDSI QLPNENSSSV LHHGIFEGVL  360
PEFWPHHQHQ SLNADFYSNL LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-251442171184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00161DAPTransfer from AT1G27360Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071232.11e-153squamosa promoter-binding-like protein 3
RefseqXP_020547500.11e-153squamosa promoter-binding-like protein 3
RefseqXP_020547501.11e-153squamosa promoter-binding-like protein 3
TrEMBLA0A075FEU71e-148A0A075FEU7_SALMI; SQUAMOSA promoter binding protein-like 2 (Fragment)
STRINGMigut.E00014.1.p1e-116(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444