PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100259680101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 868aa    MW: 94008.8 Da    PI: 6.6135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100259680101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07458481226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   k ++Cr++++ G C+ Gd+CkF+H+
  Ote100259680101|100259680101 458 KIVICRHYLQ-GRCHEGDKCKFSHD 481
                                   6689******.*************6 PP
2zf-CCCH18.14.8e-06515535525
                                   --SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                   +C+++  +G+C++G+ C F+H
  Ote100259680101|100259680101 515 PCNNYVLNGFCNRGSECMFSH 535
                                   7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.389456483IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4456482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-7456481IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5458481IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5458481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.892485512IPR000571Zinc finger, CCCH-type
SMARTSM003562.3487509IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4511537IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5514539IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.483515538IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MCRLNGGLVA AAELNRKSHA NRMFFPAAPP PAATQPYICL AHPNSLSLPR SAPNASNVNC  60
GDFESGSVSE EDGSITYSQA ITTNVLVSPS VKGSGDKVVR ETSEGETKEK TGFQGCDGKQ  120
ATPTELLRPE LARDSGPALT PSNQISVDDY MVVEEQMNGC DVPSTEDLTN ASSVLDAQME  180
DLDTLKDVVG MDMDSSFNHS NEVRNFNFGS DMVVETLKAK QLSQEEDTVL EENTPKDVEH  240
ELQMKEMELE NLIYSSGKKD ASFCQNSGET EEGEISGDAG VADESFDVLS DGTSLGEETT  300
ETLHASKGYF DVDGLLPTDK DRGHQQSGVS NLSRVNTVTI ESHLEKVKNI IPAEESQEEI  360
PCPSHMETPK SGDIHHCLEN LTPPGRIHQE NASGNQISMT NEMDEDAGKN KRKRGMSKER  420
RAKKKCFLQK KERLKRAAKN RELGVKRLKL PTVVKPKKIV ICRHYLQGRC HEGDKCKFSH  480
DAVPYTKSKP CGHFARNSCM KGDQCTHDHE LFKYPCNNYV LNGFCNRGSE CMFSHEMAAK  540
IRSEPQNVPK NDLISPQQTA PEKQGSHPMS MFKSELKPPS PLNNPNCSRP MDSCGTSHQK  600
VNSRLSSAAN SPAQIESPAL KPVPRTVSQA PKGVSFLRNG VVPLGNTNKD NQNESSAKRS  660
DDFGAGSKGT VTVPDGISEL SGMSEVVAPR KPQGINFLSF GQPPSDDSSN KIYSKLLSVY  720
NDGVGKSAIN GMSKGKLTCS LAQGAGTPNA NGTDKANGTP LTMPQNVKFL SFNRSHLDLS  780
TSKETANLDS NKGKERENSN KLKDTTGTLS PSFGGPPTSG WSANLSSSSK TPLFSNTPSF  840
VQKAVQSTLA FAAQLETDIK VGSSHHRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9AH420.0A0A4D9AH42_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720