PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100259820031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 141aa    MW: 15376.2 Da    PI: 10.4186
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100259820031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA627.4e-205386134
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                                  Cs C+t+kTplWR+gp g+k+LCnaCG++yrkk+
  Ote100259820031|100259820031 53 CSDCKTSKTPLWRSGPTGPKSLCNACGIRYRKKR 86
                                  ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-1547100IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-134786No hitNo description
Gene3DG3DSA:3.30.50.105.1E-165186IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.8E-185386IPR000679Zinc finger, GATA-type
CDDcd002021.57E-1353103No hitNo description
PROSITE patternPS0034405378IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.5715383IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
PIFSHSFCSL LSIIIISAFL FLPLRKSSKY RSQKVMESCL KEETIGTEIK KCCSDCKTSK  60
TPLWRSGPTG PKSLCNACGI RYRKKRGGPS TARSDCKKGK TRNLMPLGQG VEVAAKTPTK  120
WGEVERAALL LMALSCGAVF G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837670.17e-34PREDICTED: GATA transcription factor 16-like
TrEMBLA0A4D9BH544e-42A0A4D9BH54_SALSN; Uncharacterized protein
STRINGMigut.B00988.1.p3e-33(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721