PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100260770061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 209aa    MW: 24203.3 Da    PI: 9.8943
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100260770061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.8e-124480138
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                                  rg W + Ed +l ++v+q+G+ +W++Ia++++ gR+++
  Ote100260770061|100260770061 44 RGHWRPHEDARLRELVAQFGPQNWNLIAEKLQ-GRSGN 80
                                  899*****************************.***98 PP
2Myb_DNA-binding55.71.2e-1789130346
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   ++++eE+e+l+ a+ ++G++ W+ Iar ++ gRt++ +k++w+ 
  Ote100260770061|100260770061  89 AFSEEEEERLLAAHSMYGNK-WAMIARLFP-GRTDNAVKNHWHV 130
                                   69******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2653981IPR017930Myb domain
SMARTSM007170.0224385IPR001005SANT/Myb domain
PfamPF002494.3E-104480IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-2044128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-124581IPR009057Homeodomain-like
CDDcd001679.38E-84786No hitNo description
PROSITE profilePS5129424.89682136IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-1884135IPR009057Homeodomain-like
SMARTSM007173.3E-1486134IPR001005SANT/Myb domain
PfamPF002492.6E-1489129IPR001005SANT/Myb domain
CDDcd001677.18E-798129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDLHNPIDRN GMQDLTFVPP RPAPWPFENE FGPPKPVHTK VCARGHWRPH EDARLRELVA  60
QFGPQNWNLI AEKLQGRSGN KMIKLKQRAF SEEEEERLLA AHSMYGNKWA MIARLFPGRT  120
DNAVKNHWHV IMARKHRERS HVYRRRKPSF PYLKEGNGDQ QSDSNSEVSA SESIVANNRA  180
NLYNCGENEK EKFEKRDMAF IDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22431356107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012839515.12e-66PREDICTED: transcriptional activator Myb-like
SwissprotQ5NBM81e-53CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A059PRU62e-82A0A059PRU6_SALMI; MYB-related transcription factor
STRINGMigut.J01602.1.p8e-66(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]