PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100260790031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 755aa    MW: 83036.9 Da    PI: 6.7136
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100260790031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-19355454198
                                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 
                                   f+k+l+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  +L++g
  Ote100260790031|100260790031 355 FEKTLSASDAGRIGRLVLPKACAEAYfpTINQSEGIPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAG 434
                                   99**************************777788999***************9989999999***9.************** PP

                                   -EEEEEE-SSSEE..EEEEE- CS
                            B3  78 DfvvFkldgrsefelvvkvfr 98 
                                   D+v+F++++  +++lv++ ++
  Ote100260790031|100260790031 435 DTVIFSRID-PGGQLVIGCRK 454
                                   ******887.88888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-20352453IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-29352459IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-23353454No hitNo description
PfamPF023621.6E-16355454IPR003340B3 DNA binding domain
SMARTSM010191.9E-20355455IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912355456IPR003340B3 DNA binding domain
PROSITE profilePS5105013.434505555IPR011124Zinc finger, CW-type
PfamPF074963.2E-13511552IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MGSKNCMNEV CRATTSPDWK KGWSLKSGGF AKLCYKCGSA YESSVFCETY HSEESGWREC  60
RICGKIVHCG CIASRHLFEH MEFGGVACIS CAKRLEIHSP PSLQVIAHYG LNYDSLCFYE  120
LIIVDMCQKL DDHSYGIPCD ISIDKSANKN GSRDINPIVV EHRVDDEKFS TRKLLQLTRA  180
IGVHNATSAV EQLKKEEPLL RPTESSKRVH NNSQNCSSSV FAKPYYSRPK QGIKDMYETL  240
ANPSLKFSLS SPWSVSNNVL PIPGGAVPGG IVEANEQSKG SSLQRGRHIS PKPPKPSPVA  300
GSEANKGSAS QTRIPRPPAE GRGRNQLLPR YWPRITDQEL QQLSGDLKST IVPLFEKTLS  360
ASDAGRIGRL VLPKACAEAY FPTINQSEGI PIRIQDIKGK EWTFQFRFWP NNNSRMYVLE  420
GVTPCIQNMQ LQAGDTVIFS RIDPGGQLVI GCRKATNNAD VQEPQTPAAV NNDSPGEALF  480
SGVTDAQNSE PPVFGKRTVF ISQASGEQEQ LVQCDSCLKW RRLPVNALLS AKWTCSDNIW  540
DSNRGSCSVP EDYSPMDLDP YSVNKASTAT GIKLNAYNSS RRQHRRHVRV FGRAHHEASA  600
ASPGLLVHRL HPAAEREGQA RADLQMQRLP DGPAPLQDAH DAQEEAPVGA RGRARPRQXX  660
XXXXXXXXXX XXXXXXXXXD DELEKEDIAG LALLNMNNLD NDNEDVDETN KGQLDLNCDP  720
HREDEAIGET LSALENGAGE SVAAAAANEG GENVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-703334622131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080654.20.0LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1
TrEMBLA0A4D8YV420.0A0A4D8YV42_SALSN; Uncharacterized protein
STRINGMigut.D00818.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365