PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100261470101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 213aa    MW: 24538.1 Da    PI: 4.8403
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100261470101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEde+l  +v+++G  +W++ ++  g+ R++k+c++rw +yl
  Ote100261470101|100261470101 14 KGAWSKEEDEILRAYVARFGHSNWRLLPSFAGLARCGKSCRLRWVNYL 61
                                  79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-22871IPR009057Homeodomain-like
PROSITE profilePS5129420.868965IPR017930Myb domain
SMARTSM007172.5E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-141461IPR001005SANT/Myb domain
SuperFamilySSF466892.19E-181577IPR009057Homeodomain-like
CDDcd001679.77E-101661No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVKPPTFDSN GMKKGAWSKE EDEILRAYVA RFGHSNWRLL PSFAGLARCG KSCRLRWVNY  60
LKPGLKRGKF TKQEEELNRR RRGGDSDYSR RAPKLKEEDQ DQDRESSSSE TNSCVTIDDH  120
QEESGENPKK IDAPINPIAD LYSFARAQHD DSYNQTFLSQ LNLDLPPLAP KEELHDFEMF  180
KEMQNDSSNS SFSDGGDLWF ESFGEETLDM VLW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW8SLK83e-61W8SLK8_SALMI; Transcription factor mybp
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154