PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100262210011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 154aa    MW: 17456.4 Da    PI: 8.6102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100262210011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000471638123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C++ F ++  L  H++ H
  Ote100262210011|100262210011 16 FPCSYCSRKFHSSQALGGHQNAH 38
                                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-61443No hitNo description
PfamPF139121.5E-61540IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5721643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEDSNQTKAE DAAKYFPCSY CSRKFHSSQA LGGHQNAHKK ERSAAGKSKR GASDYALMPS  60
PPLIYHPIGI FNPSPFVNVH QMGGSNGLAR LEDVAFYPYN VAHEQSCERS RVRCVXXXXX  120
XXXEREWNNS YSAQSFGDYQ RPHRDQKLDL SLHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8Y2F29e-35A0A4D8Y2F2_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA796945