PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100262610031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YA

Protein Properties

Length: 206aa MW: 23373.5 Da PI: 10.1993

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100262610031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	89.7	4e-28	70	124	3	58
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++I++RR+kRa+++ +++l k rkpylh SRh hA+rRpRg+gGrF Ote100262610031\|100262610031 70 PIFVNAKQYNGIMRRRKKRAQADLHNNL-LKIRKPYLHLSRHLHAKRRPRGNGGRF 124 9*************************.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-27	66	127	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	30.257	67	127	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-24	70	124	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-19	70	92	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-19	101	124	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MGKFHRYLLP PWIIEGILSL DVDIHCKWKM VQICGKYPYP DQCYGVYSSY GPQFGGRMML 60 PLNFGSDGGP IFVNAKQYNG IMRRRKKRAQ ADLHNNLLKI RKPYLHLSRH LHAKRRPRGN 120 GGRFLNTKSS TAEATKKIRS ESSSPTGSEV SSDHEAFPDK AIGNDAALDL FQLNNLHHSF 180 HHPFPDGPGX XXXXXXXXAT ENYLKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-12	70	132	4	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094246.1	9e-53	nuclear transcription factor Y subunit A-10
Refseq	XP_020553756.1	9e-53	nuclear transcription factor Y subunit A-10
Refseq	XP_020553757.1	9e-53	nuclear transcription factor Y subunit A-10
TrEMBL	A0A2Z4K5F5	1e-57	A0A2Z4K5F5_TECGR; NF-Y2 protein
STRING	Migut.J00688.1.p	7e-48	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47