PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100263640051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 628aa    MW: 69166.3 Da    PI: 8.6932
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100263640051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.31.3e-27352410160
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   ldDgynWrKYGqK vkg++f rsYYrCt+ +C++kk+ve+s+  + + +i Y g+H+h+k
  Ote100263640051|100263640051 352 LDDGYNWRKYGQKLVKGNKFVRSYYRCTHLNCQAKKQVEKSH-GGCISDINYLGNHHHQK 410
                                   59****************************************.9**************85 PP
2WRKY99.22.5e-31524582159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dg +WrKYGqK vkg+++prsYYrC+s+gCp+kk+ver++++pk+v++tYeg+H+he
  Ote100263640051|100263640051 524 VNDGNRWRKYGQKLVKGNPNPRSYYRCSSTGCPAKKHVERASHNPKLVITTYEGKHHHE 582
                                   58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-23346412IPR003657WRKY domain
PROSITE profilePS5081120.92347411IPR003657WRKY domain
SuperFamilySSF1182904.45E-22351411IPR003657WRKY domain
SMARTSM007742.3E-30352410IPR003657WRKY domain
PfamPF031062.5E-20353409IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-33511584IPR003657WRKY domain
SuperFamilySSF1182901.06E-27516584IPR003657WRKY domain
PROSITE profilePS5081134.819519584IPR003657WRKY domain
SMARTSM007742.8E-35524583IPR003657WRKY domain
PfamPF031065.5E-25525581IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MSEPPNFGFD EFLVGDSNSV AYAVYLFAFC GAVGWIAALA GTVRKVLMGA VSSKRIASES  60
GELENRARAN LPSDILTKSD MLHTKSHLDV NKERERQKQK LDTKQEQLLL HPRQTSGIDC  120
HSPESLEEGG VRSCKNVNEK DSDVLMQISN SNPAIPAQVS NPVPVSHAME DSSKIPKDEE  180
RTTEKLEAVG GTSIPAQSVN GVPASLSNEQ MLIKNSQSGK ILEKLQPRRI PDAVGYGSQP  240
DQLTITSAHP EKNCATEAEP RAHNPRPSSH ALMSKEEKVT NTKQELIMKN SVQASSLSIG  300
VPVPHLGQES NTYSKMLKKV EKLQPRRNPD PIVQESKSDV GTTPSKTPEK GLDDGYNWRK  360
YGQKLVKGNK FVRSYYRCTH LNCQAKKQVE KSHGGCISDI NYLGNHHHQK PQHSPQATST  420
LQERSPEMPI ASTSKTNFEV ICKQSGLDQH MALTETSPQS TQGRNDEGLS GAVSCSKNNT  480
RDVDDFPESK RQKRDTSSVD EDVGSRSSSD SRHVVQTLSE VDLVNDGNRW RKYGQKLVKG  540
NPNPRSYYRC SSTGCPAKKH VERASHNPKL VITTYEGKHH HEIPTSSTVS QSTSRVDSNM  600
MKPNGELSSK PEDKSPVSRE IVVHVTAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-31511584174WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100622.11e-174WRKY transcription factor 1 isoform X1
TrEMBLA0A4D8ZMA90.0A0A4D8ZMA9_SALSN; WRKY transcription factor 33
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242