PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100263870011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24717.3 Da    PI: 4.9806
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100263870011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.8e-192375456
                                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  +++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Ote100263870011|100263870011 23 KRRLSVDQVKALEKNFEVENKLEPERKFKLAQELGLQPRQVAVWFQNRRARWK 75
                                  457899**********************************************9 PP
2HD-ZIP_I/II126.79.8e-4122113293
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                    krrls +qvk+LE++Fe e+kLeperK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ dalk++ e+L++
  Ote100263870011|100263870011  22 EKRRLSVDQVKALEKNFEVENKLEPERKFKLAQELGLQPRQVAVWFQNRRARWKTKQLESDYGVLKANTDALKHRYESLQR 102
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  83 eveeLreelke 93 
                                   e+e+L +++ke
  Ote100263870011|100263870011 103 ENESLLNDIKE 113
                                   *****999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.1671777IPR001356Homeobox domain
SuperFamilySSF466897.27E-191879IPR009057Homeodomain-like
SMARTSM003897.6E-161981IPR001356Homeobox domain
CDDcd000862.52E-152378No hitNo description
PfamPF000465.1E-162375IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-202484IPR009057Homeodomain-like
PRINTSPR000311.1E-54857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000311.1E-55773IPR000047Helix-turn-helix motif
PfamPF021831.7E-1477118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSNGPNSADE EACVEESDQI SEKRRLSVDQ VKALEKNFEV ENKLEPERKF KLAQELGLQP  60
RQVAVWFQNR RARWKTKQLE SDYGVLKANT DALKHRYESL QRENESLLND IKELKSKLNG  120
IDENIHAKEE ASLSDSSEEK CNLKINEEGD AYLEKCDVKE NETLAVSGDF KDSNCPIAFA  180
AAISSSAGIL HHNPYRYFNI HGGGVDTNSH FPTQGREF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100030.16e-62homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A4D8ZZH95e-64A0A4D8ZZH9_SALSN; Homeobox-leucine zipper protein
STRINGcassava4.1_012419m9e-60(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453