PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100265270011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 215aa    MW: 24861.6 Da    PI: 9.5631
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100265270011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.4e-16221001497
                                   T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                            B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                   + l++p +f++++ ++ e ++ ++   + g+ Wev++  r   g+ ++++GW+eFvk+n++   D ++F+l+  s+f  +v
  Ote100265270011|100265270011  22 SKLCVPTNFVTKYRQQVEWKVSVV-LERGGKFWEVRI--RDENGELYMKDGWSEFVKDNNVTHLDCLTFRLIAVSTF--KV 97 
                                   5699*********66655545555.55699*******..99999****************************98999..88 PP

                                   EEE CS
                            B3  95 kvf 97 
                                   ++f
  Ote100265270011|100265270011  98 SIF 100
                                   887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.7039103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-179105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-1912105IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-912103IPR003340B3 DNA binding domain
CDDcd100172.12E-1221100No hitNo description
PfamPF023628.2E-1422100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-9111204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-8112204IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.796115215IPR003340B3 DNA binding domain
SMARTSM010191.4118210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MARAEELQTA SFMMLCLGEY SSKLCVPTNF VTKYRQQVEW KVSVVLERGG KFWEVRIRDE  60
NGELYMKDGW SEFVKDNNVT HLDCLTFRLI AVSTFKVSIF TPSGCPRLPI TESNPLYFEV  120
YLKKHHRARL NSPKKFSDAA GLWGKKYVRL ENAAKHKYKF VAVNQRSCGA ARNVIDFTAG  180
WREFREASGL DIGKTCSFRF NPDTDVIRVE EIKQH
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931