PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100265270041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 230aa    MW: 26666.1 Da    PI: 9.2455
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100265270041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.2e-17231001597
                                   -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                            B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                    l++p kf++++ ++ +++ + ++  + g+ W+vk   +  +g+ ++++GW+eFvk+n++   Df++F+l+ rs+f   v+
  Ote100265270041|100265270041  23 KLRIPTKFVTKYREQVARK-DSVILESGGKFWKVKT--EDEDGELYMKDGWSEFVKDNNVTHLDFLTFRLIARSTF--EVS 98 
                                   599*********6665665.4555556*********..*********************************99999..777 PP

                                   EE CS
                            B3  96 vf 97 
                                   +f
  Ote100265270041|100265270041  99 IF 100
                                   76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.7889103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.51E-179105IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-916103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-2018105IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-1220100No hitNo description
PfamPF023623.2E-1523100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-10131219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-10132220IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.08135227IPR003340B3 DNA binding domain
PROSITE profilePS508637.641194230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARVEELQTA SFMMLCLGEF SYKLRIPTKF VTKYREQVAR KDSVILESGG KFWKVKTEDE  60
DGELYMKDGW SEFVKDNNVT HLDFLTFRLI ARSTFEVSIF TPDGCPRLPI TSPTGRNHLX  120
XXXXXRREEG NPLCFEVYLT KHHTSRLNVS KKFMVAAGLW GKNYVRLECV ATGNSKFVAV  180
KERQCWSTHT VIDLTSGWRQ FWEANGLHVG KTCSFRFDPH KKAIRVEEIN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931