PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100265300021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 163aa MW: 17853.1 Da PI: 8.7599

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100265300021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.1e-06	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cg+ F+++ + H+r H Ote100265300021\|100265300021 87 YNCSVCGRKFRTPQAMFGHMRAH 109 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.69E-6	85	111	No hit	No description
Pfam	PF13912	5.2E-8	86	111	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.5E-4	86	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.783	87	109	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.9E-4	87	109	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MDTTANSSSS STPPPAAATR AGENIPTXXX XXXSPPVRAL DASTDSAGAE MISETPPSRK 60 RKRDSVAXXX XXXXXXXXXX XETGRTYNCS VCGRKFRTPQ AMFGHMRAHP DRGWTGAHPP 120 PAFRAEEEFA DLRSXXXXXX XXXXXEGKSY RVPDLNKPPP SDA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069476.1	4e-22	uncharacterized protein LOC105155299
Refseq	XP_011100162.1	4e-22	uncharacterized protein LOC105178395
Refseq	XP_011100164.1	4e-22	uncharacterized protein LOC105178398

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9281	7	13