PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100266140111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 287aa    MW: 32297.4 Da    PI: 8.3814
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100266140111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.6e-067094126
                                  --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                  yk elC  f++ G C yG++C+FaH 
  Ote100266140111|100266140111 70 YKSELCFLFQK-GRCFYGGNCHFAHK 94
                                  899********.*************5 PP
2zf-CCCH24.25.9e-08121143325
                                   S---SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                                    ++C++f+ + +C+yGd+C+F H
  Ote100266140111|100266140111 121 GRECHYFSSGAECPYGDSCNFLH 143
                                   689******88************ PP
3zf-CCCH222.8e-07187212327
                                   S---SGGGG.TS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffar.tGtCkyGdrCkFaHgp 27 
                                   t+lC  +   +G C+yGd+C++aHg+
  Ote100266140111|100266140111 187 TKLCAKWKDnFGSCPYGDKCTYAHGR 212
                                   666666654168************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.8E-86899IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-46995IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9626996IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-1170101IPR000571Zinc finger, CCCH-type
SMARTSM003563.3118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005119146IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-6122143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4124143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-8183216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587184213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-14184217IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5186212IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043186212IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNTNHIDDAQ ISAPVDFGGK NGCDNRPQSK ISNLQSFSCH CLKKPRSLGR YSPYTRIPIW  60
VNRAKLSIPY KSELCFLFQK GRCFYGGNCH FAHKPSEIRK PGLKAAEMEE HVSERNAVFG  120
GRECHYFSSG AECPYGDSCN FLHKCSHIFR RDGAGRNGLS DGSGNYWIDC SSLNGGQHYD  180
KSIFHKTKLC AKWKDNFGSC PYGDKCTYAH GREELQKVGH VAELEDGRAS RLMLYSQARK  240
AGSCTRIKIA ENLQMEEDEV HSMRKDISKI SEIYADWIGV GLDFPVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072245.15e-94zinc finger CCCH domain-containing protein 39-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434