PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100266180021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 261aa    MW: 29268.8 Da    PI: 4.7029
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100266180021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-172370148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT +Ed  l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Ote100266180021|100266180021 23 RGPWTVDEDFTLINYIAHHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 70
                                  89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.221874IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-202073IPR009057Homeodomain-like
SMARTSM007173.5E-142272IPR001005SANT/Myb domain
PfamPF002495.0E-162370IPR001005SANT/Myb domain
SuperFamilySSF466891.8E-212497IPR009057Homeodomain-like
CDDcd001673.39E-122570No hitNo description
PROSITE profilePS500903.99671108IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-57496IPR009057Homeodomain-like
SMARTSM007174675195IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDHHQDGKAS TNYSDEDLLE LRRGPWTVDE DFTLINYIAH HGEGRWNSLA RSAGLKRTGK  60
SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNSKQF QDTMRYLWMP RLVERIQASA  120
NAGGGDGASS STPTYHLTNT NLDTRLAQIA PPHSTIGGGG VHTFTPENSS AAASSDSFGT  180
PVSDLTDCYN NYPANQDYYP ANQFGNYGDQ SLTSPTVGYF NQGLDFVEQN GQWAMDGEDV  240
SDSLWNVDDM WFSQQQFNSN A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-1320962499MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071358.11e-102transcription factor MYB108
SwissprotQ9FGY36e-54MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A2G9HKQ11e-102A0A2G9HKQ1_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.G00025.1.p7e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]