PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100266800001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 66aa    MW: 7421.6 Da    PI: 10.3963
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100266800001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26077.52.4e-241064154
                        DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.r 54
                                  aCaaCk++rrkC++ C+lapyfpa+qpk f+nvh+lFG+snv+++l++l+ ++ r
  Ote100266800001|100266800001 10 ACAACKYQRRKCSPTCPLAPYFPANQPKMFQNVHRLFGVSNVTRTLNNLKSKDfR 64
                                  7***********************************************9887645 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.786966IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-231062IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MTVKGGTTPA CAACKYQRRK CSPTCPLAPY FPANQPKMFQ NVHRLFGVSN VTRTLNNLKS  60
KDFRDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-17265466LOB family transfactor Ramosa2.1
5ly0_B3e-17265466LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085863.11e-33LOB domain-containing protein 22-like
SwissprotQ9STS64e-26LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A2G9GDN99e-34A0A2G9GDN9_9LAMI; Uncharacterized protein
TrEMBLA0A4D9C4N96e-34A0A4D9C4N9_SALSN; Uncharacterized protein
STRINGMigut.K01341.1.p2e-30(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]