PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100267110011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 302aa    MW: 33839.4 Da    PI: 4.6338
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100267110011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65e-1959112356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Ote100267110011|100267110011  59 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 112
                                   566899***********************************************9 PP
2HD-ZIP_I/II129.51.3e-4158150193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++dalk + e+L+
  Ote100267110011|100267110011  58 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANHDALKLKYETLQ 138
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +e+e+L++e++e
  Ote100267110011|100267110011 139 RENESLHNEIRE 150
                                   ********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-1948116IPR009057Homeodomain-like
PROSITE profilePS5007117.11954114IPR001356Homeobox domain
SMARTSM003896.3E-1857118IPR001356Homeobox domain
CDDcd000861.39E-1759115No hitNo description
PfamPF000463.2E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-2061121IPR009057Homeodomain-like
PRINTSPR000318.3E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000318.3E-694110IPR000047Helix-turn-helix motif
PfamPF021834.0E-16114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009637Biological Processresponse to blue light
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKRLSSSDSL AGLMSICPNS TVDEHNHGNN PIYTRDFQTM MDGLEEEGCV EESCNISEKK  60
RRLSVDQVKA LEKNFEVENK LEPERKVKLA QELGLQPRQV AVWFQNRRAR WKTKQLERDY  120
GVLKANHDAL KLKYETLQRE NESLHNEIRE LKLKLNGETS VKEEASLSEN KEKSDVEIHS  180
GGAAAELNPE NCDAKENETV AIFGDFKDGS SDSDSSVILN EDNNSPIAAA ISSSGGILHH  240
RFSDIDGGGG LTNAAVNAKF GFFDAPLVKI EEHNFFGEES CTTLFSDDQA PTLHWYCNDE  300
WN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097532.11e-119homeobox-leucine zipper protein ATHB-6
TrEMBLA0A2G9I4D61e-123A0A2G9I4D6_9LAMI; Transcription factor HEX
STRINGMigut.L00161.1.p1e-112(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453