PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100267160121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 541aa MW: 60702.3 Da PI: 7.6323

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100267160121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.7	9.2e-11	38	74	1	37
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskk 37 rW+++e+laL+++r+em+ ++r+++lk+plW++vs+ Ote100267160121\|100267160121 38 RWPRDETLALLKIRSEMDAAFRDSALKAPLWDDVSSS 74 8*********************************985 PP
2	trihelix	44.1	5.5e-14	109	171	25	86
trihelix 25 klkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 k++ ++W+++ ++ e g++rs+k+Ckek+en+ k+++++k+g+++r+ + +++++f+qle Ote100267160121\|100267160121 109 KRIVGKWSKIYVAIrklGELGYNRSAKKCKEKFENIYKYHRRTKDGRSSRH--NGKNYKFFEQLE 171 4667889888655555599****************************85..4557****97 PP
3	trihelix	96.7	2.2e-30	380	464	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k e+ aLi ++++++ +++++ k+plWee+s m++ g+ rs+k+Ckekwen+nk+yk++ke++kkr +e+s+tcpy Ote100267160121\|100267160121 380 RWPKAEIEALIMLKTDLDFKYQDNGPKGPLWEEISTCMKKLGYDRSAKRCKEKWENINKYYKRVKESNKKR-AEDSKTCPY 459 8*******************************************************************8.89999** PP trihelix 82 fdqle 86 f+ l+ Ote100267160121\|100267160121 460 FSMLD 464 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.553	31	145	IPR017877	Myb-like domain
SMART	SM00717	10	35	147	IPR001005	SANT/Myb domain
CDD	cd12203	5.95E-16	37	152	No hit	No description
Pfam	PF13837	6.0E-8	113	171	No hit	No description
PROSITE profile	PS50090	7.166	373	437	IPR017877	Myb-like domain
SMART	SM00717	5.8E-4	377	439	IPR001005	SANT/Myb domain
CDD	cd12203	1.52E-25	379	444	No hit	No description
Pfam	PF13837	5.8E-21	379	466	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MLDSSVFVNN GSSAPDTRIN DGGGGDDGDV ERNSGGSRWP RDETLALLKI RSEMDAAFRD 60 SALKAPLWDD VSSSSLCCFK LSSIEFDLLA MCRVVSGLNA CFRIDECQKR IVGKWSKIYV 120 AIRKLGELGY NRSAKKCKEK FENIYKYHRR TKDGRSSRHN GKNYKFFEQL ELFDTNLSVP 180 STPLNQIPSY AVETPSSALG TTTNVMAKAV VSSSQDRDAE FVSASTSTAS SSGKESGGSV 240 KKKRKLADYL ESLMKNVLQK QEDLQNMFLE AIEQCEKDRI AREEAWKVQE MARIKREQEF 300 LAQERVNAAA KDAAVLAFLQ KITMQVPSLN VPEILSPLFE KPSDKQENGL EKHGYLNENG 360 VGETSAHSAG ENTMQMSSSR WPKAEIEALI MLKTDLDFKY QDNGPKGPLW EEISTCMKKL 420 GYDRSAKRCK EKWENINKYY KRVKESNKKR AEDSKTCPYF SMLDSLYANK SKNSQHCLNL 480 KPEQILMQMM GQQQQPQGSH QLLGEYGDGG HQNQEDDADN DDSGDGYRIV ANNLSSVKTL 540 G

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MLDSSVFVNN GSSAPDTRIN DGGGGDDGDV ERNSGGSRWP RDETLALLKI RSEMDAAFRD  60
SALKAPLWDD VSSSSLCCFK LSSIEFDLLA MCRVVSGLNA CFRIDECQKR IVGKWSKIYV  120
AIRKLGELGY NRSAKKCKEK FENIYKYHRR TKDGRSSRHN GKNYKFFEQL ELFDTNLSVP  180
STPLNQIPSY AVETPSSALG TTTNVMAKAV VSSSQDRDAE FVSASTSTAS SSGKESGGSV  240
KKKRKLADYL ESLMKNVLQK QEDLQNMFLE AIEQCEKDRI AREEAWKVQE MARIKREQEF  300
LAQERVNAAA KDAAVLAFLQ KITMQVPSLN VPEILSPLFE KPSDKQENGL EKHGYLNENG  360
VGETSAHSAG ENTMQMSSSR WPKAEIEALI MLKTDLDFKY QDNGPKGPLW EEISTCMKKL  420
GYDRSAKRCK EKWENINKYY KRVKESNKKR AEDSKTCPYF SMLDSLYANK SKNSQHCLNL  480
KPEQILMQMM GQQQQPQGSH QLLGEYGDGG HQNQEDDADN DDSGDGYRIV ANNLSSVKTL  540
G

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099803.1	0.0	trihelix transcription factor GT-2-like
TrEMBL	A0A4D8YC98	0.0	A0A4D8YC98_SALSN; Uncharacterized protein
STRING	Migut.H01112.1.p	1e-166	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9794	23	28