PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100267660001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 309aa MW: 34892.4 Da PI: 8.4192

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100267660001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.2e-52	15	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp e+ewyfFs+rd+ky++g r+nra++sg Ote100267660001\|100267660001 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELP------EQEWYFFSPRDRKYPNGARPNRAATSG 88 79**************************.89**********9......589******************** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+v++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Ote100267660001\|100267660001 89 YWKATGTDKPVMTGgGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 136 *********867788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-61	7	171	IPR003441	NAC domain
PROSITE profile	PS51005	60.917	15	170	IPR003441	NAC domain
Pfam	PF02365	1.5E-28	16	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009753	Biological Process	response to jasmonic acid
GO:0045995	Biological Process	regulation of embryonic development
GO:0048317	Biological Process	seed morphogenesis
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MESTDSSTGS QQPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL 60 PEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPVM TGGGTQKVGV KKALVFYGGK 120 PPKGIKTNWI MHEYRLVDNK PSSKPPGCDF VNKKASLRLD DWVLCRIYKK NNAQRPLEHE 180 RGGDDIHDVM IPHTLSMGNH HKYLENEYQG MMSDVMNSHL ASKEVAPPLH LLPPAKRSMP 240 NLYWNDDNSA NSPSTKRFMG ENNCDETTNS IATILSQLPQ TPSLQQQTML GNLGDGVFGQ 300 QPYQVNWYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-70	1	173	6	168	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-70	1	173	6	168	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-70	1	173	6	168	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-70	1	173	6	168	NO APICAL MERISTEM PROTEIN
3swm_A	9e-70	1	173	9	171	NAC domain-containing protein 19
3swm_B	9e-70	1	173	9	171	NAC domain-containing protein 19
3swm_C	9e-70	1	173	9	171	NAC domain-containing protein 19
3swm_D	9e-70	1	173	9	171	NAC domain-containing protein 19
3swp_A	9e-70	1	173	9	171	NAC domain-containing protein 19
3swp_B	9e-70	1	173	9	171	NAC domain-containing protein 19
3swp_C	9e-70	1	173	9	171	NAC domain-containing protein 19
3swp_D	9e-70	1	173	9	171	NAC domain-containing protein 19
4dul_A	8e-70	1	173	6	168	NAC domain-containing protein 19
4dul_B	8e-70	1	173	6	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00361	DAP	Transfer from AT3G15510	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098344.1	1e-169	NAC transcription factor 56
Swissprot	Q9LD44	1e-109	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2G9HYQ0	1e-155	A0A2G9HYQ0_9LAMI; Uncharacterized protein
STRING	EOY12852	1e-153	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]