PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100268410001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 567aa    MW: 62659.6 Da    PI: 7.9846
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100268410001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.00033263280219
                                   HHHHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsa 19 
                                   r +h++ E+rRR++iN++
  Ote100268410001|100268410001 263 RSKHSATEQRRRSKINDR 280
                                   889*************96 PP
2HLH25.13.1e-083233551955
                                   HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    f++Lre++P++    ++K +Ka+ L +++eYI+ Lq
  Ote100268410001|100268410001 323 LFHKLREIIPNS----DQKRDKASFLLEVIEYIQFLQ 355
                                   699********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.1E-18263280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.10E-8263358No hitNo description
PfamPF000101.4E-5323355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-10323382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-18324377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MELPFGTEGR KATHDFLSLY SSPAAHTQQD PSPQQGGYLK THDFLQPLER EGKNVTTTKE  60
DIKAGLAAVD RPSVPAPPAS VEHILPGGIG TYSISYFNQM ALKPEGSLFT AQPSSTARND  120
ENSNCTSYPG GSFTLWDESA IKKGKTGKEN ISVERHILRE AGVNVVGGQW TSFLEKPSRS  180
SSNHRHNATN FSSLSSSQPS SSQKNQSFMD MMMTSTKNDL XXXXXXXXXX FMSIKKEPSC  240
HLKGNLSVKV EAKTIDQKPN TPRSKHSATE QRRRSKINDR HVYQPPQFEV QDFDQLSEFA  300
SVFPCYIMSS YHHPESFLGL FTLFHKLREI IPNSDQKRDK ASFLLEVIEY IQFLQEKVNR  360
YENSYNVWNQ ESSKMMHWQR NCHINEGVID RTVGVSSDSA PTALVFGKKF EENKGGVSPS  420
LPTSGQNLVD SDLSSDTTLR ERVQPPILTT KGLANILSLG SISVPPKLGS EVDKSTTRPQ  480
SQLLRSCNKM TEQEVSIESG TINISSVYSQ GLLNTLTQAL ESSGVDLSQA SVSVQIDLGK  540
RASSLVSKVD EGGKEELGHA SKKVRSS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078682.10.0transcription factor BIM1 isoform X1
TrEMBLA0A4D8ZFI00.0A0A4D8ZFI0_SALSN; Uncharacterized protein
STRINGMigut.D01611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345