PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100268560041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YA
Protein Properties Length: 185aa    MW: 20916.8 Da    PI: 10.3429
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100268560041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31.1e-3250106158
                     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                   +ep+YVNaKQy++Il+RRq Rak+e ekkl  k+rkpylheSRhkhA+rR RgsgGrF
  Ote100268560041|100268560041  50 EEPVYVNAKQYHGILRRRQIRAKAELEKKL-VKNRKPYLHESRHKHAMRRLRGSGGRF 106
                                   69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-3748109IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.98649109IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-2851106IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-245274IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068605474IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-2483106IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MLTYGARCLG KCSLISLDST AKTGLDWFQV HPHLLGYHPG RMPLPLEMEE EPVYVNAKQY  60
HGILRRRQIR AKAELEKKLV KNRKPYLHES RHKHAMRRLR GSGGRFLNTK KPDDKENSNF  120
GEQSKSGDTA SARFGVSHQH NSMVQEIQKD HILSHGFISV GELGTGHFGE NYWKSVVNGA  180
PSSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-2250113265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022898001.17e-56nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_022898002.13e-56nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBLA0A4D9BFW06e-69A0A4D9BFW0_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000176986e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112322025