PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100268650011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 228aa MW: 25989.8 Da PI: 4.4158

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100268650011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	64	109	11	56
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ Le+ Fe ++++ e++++LAkkl+L+ rqV vWFqNrRa++k Ote100268650011\|100268650011 64 EVHLLEKSFEAENKLEPERKTQLAKKLNLQPRQVAVWFQNRRARWK 109 6789*****************************************9 PP
2	HD-ZIP_I/II	102.2	4.4e-33	65	151	11	92
HD-ZIP_I/II 11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkray.....dalkeenerLekevee 86 v+lLE+sFe+e+kLeperK++la++L+lqprqvavWFqnrRAR+ktkqlE+dy++Lk+ l ++ +++ ke+++ Ote100268650011\|100268650011 65 VHLLEKSFEAENKLEPERKTQLAKKLNLQPRQVAVWFQNRRARWKTKQLERDYDQLKSXXxxxxxXXLLSNYDSMVKENDK 145 899****************************************************975111115688999******* PP HD-ZIP_I/II 87 Lreelk 92 L++e++ Ote100268650011\|100268650011 146 LKSEVE 151 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-18	50	113	IPR009057	Homeodomain-like
SMART	SM00389	2.5E-17	53	115	IPR001356	Homeobox domain
PROSITE profile	PS50071	15.758	58	111	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-20	58	118	IPR009057	Homeodomain-like
CDD	cd00086	1.31E-15	59	112	No hit	No description
Pfam	PF00046	8.3E-16	64	109	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.8E-7	111	151	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MMGFCVCPLE TPARLLWCSS FFRHNACLYW ICGSRKWSLV EFSSSSLATT TTCCSSGTVI 60 PDFEVHLLEK SFEAENKLEP ERKTQLAKKL NLQPRQVAVW FQNRRARWKT KQLERDYDQL 120 KSXXXXXXXX XLLSNYDSMV KENDKLKSEV EDRLSTGSDG SAVVDDDGRQ LLDSGDSYFP 180 NNDYADCMAA VDGINSEEDD GSDDGPRYFT DVFAVAEQQE PIGWCIWS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012849408.1	7e-79	PREDICTED: homeobox-leucine zipper protein HAT5
Swissprot	Q02283	1e-48	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A4D9BA50	9e-83	A0A4D9BA50_SALSN; Homeobox-leucine zipper protein
STRING	Migut.H00128.1.p	3e-78	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7891	23	30

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]