PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100269130091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Protein Properties

Length: 238aa MW: 27255.9 Da PI: 10.6479

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100269130091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.7	1e-13	152	221	18	93
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 l+ +f+++ ++ +++ +tl de+g +W v + rk++ l++GWk+F+ +++L +gD +vF+l+ + f+ + Ote100269130091\|100269130091 152 LSSDFCRRR-LP-RNDGVVTLVDEQGLEWPVVYLARKTG----LSGGWKKFAVDHNLVDGDALVFQLITPTVFKVF 221 445566555.22.23346*************666665....*********************9976766554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.86E-20	137	225	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-17	137	225	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.76E-20	140	224	No hit	No description
SMART	SM01019	5.9E-17	142	228	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.6E-11	152	220	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.899	152	226	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MVMSKVKYEA IRQQRLEENK KRLEELHLPL LSQALKTAST PKSSPVXXXX XXXXXXTHMK 60 KTKPRIARTE MVPVRRSLRF SNISAPQYQE VTVYDRVQLP RRVSRPRRVL LNRVYATEEA 120 RESGVKRAQE IESALGGDHP TFVRSMLPSH GLSSDFCRRR LPRNDGVVTL VDEQGLEWPV 180 VYLARKTGLS GGWKKFAVDH NLVDGDALVF QLITPTVFKV FITRVDTETS TIEESMPQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083863.1	1e-121	B3 domain-containing protein At5g42700
Refseq	XP_011083864.1	1e-121	B3 domain-containing protein At5g42700
TrEMBL	A0A1J6IHH1	1e-94	A0A1J6IHH1_NICAT; B3 domain-containing protein
STRING	XP_009783454.1	5e-95	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71