PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100269470021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 196aa    MW: 21986.6 Da    PI: 9.1971
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100269470021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.52.2e-3925101278
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   C v++C+adl  +++yhrrhkvCe+hsk+p+v++ g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+++
  Ote100269470021|100269470021  25 CLVDDCDADLRLCRDYHRRHKVCEAHSKTPKVTIGGREQRFCQQCSRFHSLVEFDEGKRSCRKRLDGHNRRRRKAHP 101
                                   **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-322086IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.1462299IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-3623103IPR004333Transcription factor, SBP-box
PfamPF031106.9E-302598IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDSSSFLGPC KRARAPANIA QVAHCLVDDC DADLRLCRDY HRRHKVCEAH SKTPKVTIGG  60
REQRFCQQCS RFHSLVEFDE GKRSCRKRLD GHNRRRRKAH PQSCRNPVVE ERLLSFASPQ  120
ILTSSSTYNT THHVHTQTSF TPPALSLLSP PTAPEFGFHY YSPYAEGPIS PAQASSTSAA  180
ASSHHQNLNF ASFFPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2825981184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022885332.12e-58teosinte glume architecture 1-like
RefseqXP_022885337.12e-58teosinte glume architecture 1-like
RefseqXP_022885345.12e-58teosinte glume architecture 1-like
RefseqXP_022885354.12e-58teosinte glume architecture 1-like
RefseqXP_022885362.12e-58teosinte glume architecture 1-like
RefseqXP_022885372.12e-58teosinte glume architecture 1-like
RefseqXP_022885384.12e-58teosinte glume architecture 1-like
TrEMBLA0A075FJP62e-59A0A075FJP6_SALMI; SQUAMOSA promoter binding protein-like 14 (Fragment)
STRINGXP_009764314.19e-54(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49202037