PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100269730091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

M-type_MADS

Protein Properties

Length: 108aa MW: 12566.7 Da PI: 10.6478

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100269730091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.6	3.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+ KKA+E+SvLCdaeva+++fs++gkl+e+ss Ote100269730091\|100269730091 9 KRIENKISRQVTFSKRRSGLWKKANEISVLCDAEVALLVFSTKGKLFEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.286	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.59E-39	2	78	No hit	No description
SuperFamily	SSF55455	1.96E-32	2	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-30	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.3E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-30	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MGRGRVQLKR IENKISRQVT FSKRRSGLWK KANEISVLCD AEVALLVFST KGKLFEFSSN 60 SCMARILERY EQHTYAQKKV GTPFEPKENL SLDYPKLVSR LELLQRNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	8e-20	1	92	1	84	Myocyte-specific enhancer factor 2B
1tqe_Q	8e-20	1	92	1	84	Myocyte-specific enhancer factor 2B
1tqe_R	8e-20	1	92	1	84	Myocyte-specific enhancer factor 2B
1tqe_S	8e-20	1	92	1	84	Myocyte-specific enhancer factor 2B
6byy_A	1e-19	1	92	1	84	MEF2 CHIMERA
6byy_B	1e-19	1	92	1	84	MEF2 CHIMERA
6byy_C	1e-19	1	92	1	84	MEF2 CHIMERA
6byy_D	1e-19	1	92	1	84	MEF2 CHIMERA
6c9l_A	8e-20	1	92	1	84	Myocyte-specific enhancer factor 2B
6c9l_B	8e-20	1	92	1	84	Myocyte-specific enhancer factor 2B
6c9l_C	8e-20	1	92	1	84	Myocyte-specific enhancer factor 2B
6c9l_D	8e-20	1	92	1	84	Myocyte-specific enhancer factor 2B
6c9l_E	8e-20	1	92	1	84	Myocyte-specific enhancer factor 2B
6c9l_F	8e-20	1	92	1	84	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012855287.1	4e-59	PREDICTED: agamous-like MADS-box protein AGL8
Swissprot	D7SMN6	9e-51	FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBL	A0A022RW95	1e-60	A0A022RW95_ERYGU; Uncharacterized protein
STRING	Migut.H00589.1.p	2e-61	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]