PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100270190001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 374aa MW: 41762.4 Da PI: 8.0145

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100270190001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	268.7	1.9e-82	34	374	1	329
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lLl+cA++ ssg+l+ a+++L ++s+las +g++mqRlaa f+ ALaarl++ +++lykal+ + a Ote100270190001\|100270190001 34 LIQLLLSCANHASSGNLQHADTCLRQISDLASVSGNSMQRLAARFAAALAARLVKRWPGLYKALNNGGRG---GCDMDRAK 111 689***********************************************************999998...78888889 PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgske 156 ++f ++P+l f++ + N+++++a+ g++ +H+iD++ + + W+++ +gpp+l+iT vg +ke Ote100270190001\|100270190001 112 SIFARAFPCLGFAYAVINRTLVQATMGARDIHVIDLGCGDPKLWVPFXXXXXXXXxxxdgpDGPPHLKITCVGI----NKE 188 99*****************************************9988766556666688********....99 PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll..............desvslese 223 + e+++ + k Ae+l++++efn+ v +l dl+l++L+vkpgE+la ++l lh ll +++vs ++ Ote100270190001\|100270190001 189 AQERLEGKVVKEAESLKMEIEFNF-VNVKLRDLTLDMLKVKPGEVLALTSILTLHVLLteddsvdarfglsrNNQVSECKR 268 **********************.7999*************************************99888888889 PP GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacega 303 e+L++vks++Pkv+ +veqe++hns+++++rf+e l++ysalfd ++a +++ s ++r+++E + +g+ei+n+va eg Ote100270190001\|100270190001 269 MMEFLEMVKSIRPKVMLLVEQESNHNSNRLVDRFVEGLHFYSALFDLIDAAFGAFScSNRMTIEDM-FGKEIENIVAGEGL 348 9*************************************************999*****.********** PP GRAS 304 errerhetlekWrerleeaGFkpvpl 329 er+erhe+++kW r+++ GF+p++l Ote100270190001\|100270190001 349 EREERHERYAKWGIRFMRGGFRPIQL 374 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.913	8	374	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-80	34	374	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MSSSSKSQNL DITLSLSLPP RNDSLNPQER GVKLIQLLLS CANHASSGNL QHADTCLRQI 60 SDLASVSGNS MQRLAARFAA ALAARLVKRW PGLYKALNNG GRGGCDMDRA KSIFARAFPC 120 LGFAYAVINR TLVQATMGAR DIHVIDLGCG DPKLWVPFXX XXXXXXXXXD GPDGPPHLKI 180 TCVGINKEAQ ERLEGKVVKE AESLKMEIEF NFVNVKLRDL TLDMLKVKPG EVLALTSILT 240 LHVLLTEDDS VDARFGLSRN NQVSECKRMM EFLEMVKSIR PKVMLLVEQE SNHNSNRLVD 300 RFVEGLHFYS ALFDLIDAAF GAFSCSNRMT IEDMFGKEIE NIVAGEGLER EERHERYAKW 360 GIRFMRGGFR PIQL

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MSSSSKSQNL DITLSLSLPP RNDSLNPQER GVKLIQLLLS CANHASSGNL QHADTCLRQI  60
SDLASVSGNS MQRLAARFAA ALAARLVKRW PGLYKALNNG GRGGCDMDRA KSIFARAFPC  120
LGFAYAVINR TLVQATMGAR DIHVIDLGCG DPKLWVPFXX XXXXXXXXXD GPDGPPHLKI  180
TCVGINKEAQ ERLEGKVVKE AESLKMEIEF NFVNVKLRDL TLDMLKVKPG EVLALTSILT  240
LHVLLTEDDS VDARFGLSRN NQVSECKRMM EFLEMVKSIR PKVMLLVEQE SNHNSNRLVD  300
RFVEGLHFYS ALFDLIDAAF GAFSCSNRMT IEDMFGKEIE NIVAGEGLER EERHERYAKW  360
GIRFMRGGFR PIQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-32	20	374	2	334	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554883.1	0.0	scarecrow-like protein 3
Refseq	XP_020554884.1	0.0	scarecrow-like protein 3
Refseq	XP_020554885.1	0.0	scarecrow-like protein 3
Refseq	XP_020554886.1	0.0	scarecrow-like protein 3
TrEMBL	A0A022RUN3	1e-173	A0A022RUN3_ERYGU; Uncharacterized protein
STRING	Migut.H00592.1.p	1e-174	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13570	12	16