PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100272380001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C3H

Protein Properties

Length: 97aa MW: 10576 Da PI: 4.5339

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100272380001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.3	2.5e-13	25	49	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++rtG+C yG+rC+F+H+ Ote100272380001\|100272380001 25 DEPDCIYYLRTGFCGYGNRCRFNHP 49 789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.5E-5	23	50	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.511	23	51	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-10	25	49	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-7	27	51	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.6E-6	29	49	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MGLLLEPMWP MGLGGGPESY PERPDEPDCI YYLRTGFCGY GNRCRFNHPT DRGMAMGAIR 60 TGGGEYPERV GQPICQIIVP TKSSGANEVE CQGVDYG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858954.1	3e-40	PREDICTED: zinc finger CCCH domain-containing protein 34-like
Swissprot	Q9SQU4	2e-26	C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBL	A0A4D9BLJ1	1e-39	A0A4D9BLJ1_SALSN; Uncharacterized protein
STRING	Migut.G00186.1.p	1e-39	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16834	2	5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]