PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100272380011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C3H

Protein Properties

Length: 90aa MW: 9822.01 Da PI: 4.7025

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100272380011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.5	2.2e-13	18	42	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++rtG+C yG+rC+F+H+ Ote100272380011\|100272380011 18 DEPDCIYYLRTGFCGYGNRCRFNHP 42 789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.511	16	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.5E-5	16	43	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.0E-11	18	42	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-7	20	44	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-6	22	42	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MWPMGLGGGP ESYPERPDEP DCIYYLRTGF CGYGNRCRFN HPTDRGMAMG AIRTGGGEYP 60 ERVGQPICQI IVPTKSSGAN EVECQGVDYG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858954.1	2e-38	PREDICTED: zinc finger CCCH domain-containing protein 34-like
Swissprot	Q6NPN3	4e-26	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	A0A4D9BLJ1	5e-38	A0A4D9BLJ1_SALSN; Uncharacterized protein
STRING	Migut.G00186.1.p	7e-38	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16834	2	5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]