PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100272610021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bZIP
Protein Properties Length: 198aa    MW: 22077.5 Da    PI: 7.7775
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100272610021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1231.7e-074321341
                                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                        bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeae 41
                                  NR +A rs +RK  +i eLe+kv++L++e
  Ote100272610021|100272610021  4 NRQSAARSKERKARYISELERKVQTLQTE 32
                                  **************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147033.19E-14133No hitNo description
SuperFamilySSF579595.98E-7233No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-7433No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
ILANRQSAAR SKERKARYIS ELERKVQTLQ TEAXXXXLCT TNTLPGLAPP TALRDTTGLS  60
NENTELKLRL QAMEQQAQLR DALNEALRQE VERLRVATGE ISNTSETFNL TMQRIPYNQA  120
TFFSNHPQAG SNESQNIQMQ HFQAGISSHP HPMLSAPDSM HQHQDPLGRF QGLDISNRST  180
RVKSEGPSIS ASESSSTF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076587.13e-83transcription factor RF2b
SwissprotQ6S4P43e-55RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A4D8Y1183e-86A0A4D8Y118_SALSN; Uncharacterized protein
TrEMBLA0A4D8ZAP73e-86A0A4D8ZAP7_SALSN; Uncharacterized protein
STRINGMigut.F00604.1.p3e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34252349
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]