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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100272800011 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 74aa MW: 8912.44 Da PI: 10.5415 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.7 | 4.9e-19 | 3 | 58 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++ + ++++eq+++Le +F n+++ ae++ +LA++lg++ rqV +W+qN+Ra+ek
Ote100272800011|100272800011 3 KKAKKRLSEEQVRILEFHFSFNKKLEAERKCQLAAELGVPPRQVAIWYQNKRAREK 58
678899*************************************************9 PP
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| 2 | HD-ZIP_I/II | 85.4 | 7.7e-28 | 5 | 71 | 2 | 68 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkr 68
k+rls+eqv++LE +F+ ++kLe erK +la eLg+ prqva+W+qn+RAR k + lE+d++ ++
Ote100272800011|100272800011 5 AKKRLSEEQVRILEFHFSFNKKLEAERKCQLAAELGVPPRQVAIWYQNKRAREKIQGLEMDHRGMQM 71
59***********************************************************987765 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50071 | 16.131 | 1 | 60 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 1.1E-15 | 2 | 64 | IPR001356 | Homeobox domain |
| Pfam | PF00046 | 2.4E-16 | 3 | 58 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 1.62E-12 | 3 | 60 | No hit | No description |
| SuperFamily | SSF46689 | 4.9E-18 | 3 | 65 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 5 | 58 | IPR009057 | Homeodomain-like |
| PRINTS | PR00031 | 1.2E-5 | 31 | 40 | IPR000047 | Helix-turn-helix motif |
| PROSITE pattern | PS00027 | 0 | 35 | 58 | IPR017970 | Homeobox, conserved site |
| PRINTS | PR00031 | 1.2E-5 | 40 | 56 | IPR000047 | Helix-turn-helix motif |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 74 aa Download sequence Send to blast |
MEKKAKKRLS EEQVRILEFH FSFNKKLEAE RKCQLAAELG VPPRQVAIWY QNKRAREKIQ 60 GLEMDHRGMQ MRLE |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012848650.1 | 2e-31 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
| Swissprot | Q9FN29 | 1e-19 | ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52 | ||||
| TrEMBL | A0A4D8Y4B0 | 5e-31 | A0A4D8Y4B0_SALSN; Uncharacterized protein | ||||
| STRING | Migut.M01099.1.p | 1e-30 | (Erythranthe guttata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2715 | 24 | 53 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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