PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100273220021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 234aa    MW: 26880.2 Da    PI: 5.8481
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100273220021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.1e-35221142103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+y ++ed++++++isw++ g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++         weF+
  Ote100273220021|100273220021  22 FLLKTYMMVEDPATDSVISWNDGGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKITTNR---------WEFS 93 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   ++ F+kg+++++++i+r+k++
  Ote100273220021|100273220021  94 NDRFRKGERDQICEIRRRKTA 114
                                   ******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3615105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5218111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-3318111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEGEISESAL VEYVRKASPP PFLLKTYMMV EDPATDSVIS WNDGGTAFVV WQPAEFARDL  60
LPTLFKHSNF SSFVRQLNTY GFRKITTNRW EFSNDRFRKG ERDQICEIRR RKTASNKQQP  120
NVQPHAAAES AKDHSSDNEE QRSPSASSSS EFTTLIDENK RLKRENGALN SELEVVKRKC  180
QKLLDLVAVC RGSGERENQS VXXXXXXXXX XXRWFEAVWS EIGSWVREEG EGEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-22221114104Putative transcription factor
5d5x_B1e-22221114104Putative transcription factor
5d5x_E1e-22221114104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828086.16e-98PREDICTED: heat stress transcription factor B-3
SwissprotO222303e-68HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A4D9C5913e-97A0A4D9C591_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.J01747.1.p2e-97(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241