PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100274680041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WOX
Protein Properties Length: 167aa    MW: 19501.3 Da    PI: 9.5144
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100274680041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.6e-20968357
                                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  +R+++t+eql  Leel+++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Ote100274680041|100274680041  9 TRWCPTTEQLMLLEELYRRgLRTPTAAQIQKITAHLslhgKIQGKNVFYWFQNHKARDRQ 68
                                  8*****************99*************************************996 PP
2Wus_type_Homeobox114.84.3e-37769264
             Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                                  ++tRW+Pt+eQ+++Leely++GlrtP++++iq+ita+L+ +Gki++kNVfyWFQN+kaR+rqk
  Ote100274680041|100274680041  7 TNTRWCPTTEQLMLLEELYRRGLRTPTAAQIQKITAHLSLHGKIQGKNVFYWFQNHKARDRQK 69
                                  689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.333469IPR001356Homeobox domain
SuperFamilySSF466893.85E-11472IPR009057Homeodomain-like
SMARTSM003894.6E-7673IPR001356Homeobox domain
CDDcd000863.42E-5969No hitNo description
Gene3DG3DSA:1.10.10.608.2E-8968IPR009057Homeodomain-like
PfamPF000462.6E-17968IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MMSPPSTNTR WCPTTEQLML LEELYRRGLR TPTAAQIQKI TAHLSLHGKI QGKNVFYWFQ  60
NHKARDRQKL RRKIAYQHHR LNQFLPFSSL NHHFQPQGTG GCDEAPDFER MSQTWKWDPP  120
KDGLMRSYGR DSSSMVIDLC VCGLPRYAQM SNSCSEGYNL FIFCFPL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089388.11e-48WUSCHEL-related homeobox 3-like
TrEMBLA0A4D9BWP31e-39A0A4D9BWP3_SALSN; Uncharacterized protein
STRINGcassava4.1_030827m1e-37(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951