PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100274680051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18404.8 Da    PI: 5.3058
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100274680051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.91.1e-17248147
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                                  k+ie +  r+ tfskRr+g++ KA+ +S+LCda++ + ifs+tgk +
  Ote100274680051|100274680051  2 KKIEKENDRYATFSKRRQGLFTKASDISTLCDADIGIFIFSPTGKPF 48
                                  6899****************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-20153IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-21163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.367154IPR002100Transcription factor, MADS-box
PfamPF003191.8E-21350IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-91631IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-93152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MKKIEKENDR YATFSKRRQG LFTKASDIST LCDADIGIFI FSPTGKPFSF FHPSMEAVIS  60
RLGSDQVVDD DASRLLEACS RTRVLQLNQM LEKIXXXXXX XXXXXXXXXX XXXXXXXXXC  120
GKWWQESALE NLDKEQVGEL IGLLKNMQLK LGNLREENEM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ4PSU41e-20AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A4D9B1A66e-48A0A4D9B1A6_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]