PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100274870011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 137aa    MW: 15626.5 Da    PI: 8.4923
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100274870011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-054264123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C++ F ++  L  H++ H
  Ote100274870011|100274870011 42 FSCNYCKRKFYSSQALGGHQNAH 64
                                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-64069No hitNo description
PROSITE profilePS5015711.0744269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MNHHEPNTLS FSFSSQMINL GLVLRPSSPN SCSPPSMAAR VFSCNYCKRK FYSSQALGGH  60
QNAHKLERTL AKKAREFARP HXXXXXXXXX XXXGGPLEEQ GGFERRDVMS YGYRDYISES  120
EHVHQDEISQ LDLSLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079434.17e-30zinc finger protein 2-like
SwissprotQ392617e-22ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A4D8ZVG62e-35A0A4D8ZVG6_SALSN; Uncharacterized protein
STRINGVIT_11s0052g01120.t012e-28(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88762128