PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100275050011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 162aa MW: 18546.2 Da PI: 10.3579

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100275050011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.6	3.4e-42	18	143	12	128
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ee+++ k k++g++ + evi+e+d++k+ePwdLp+ +k+++ ew+fF++rdkky++g r+nrat++gyWkatgkd+ Ote100275050011\|100275050011 18 EEIIHARRKLKINGRHSAV-EVIPEIDVCKWEPWDLPAlsVIKSDDPEWFFFCPRDKKYPNGYRSNRATEAGYWKATGKDR 97 6777665566666776666.99*************4447888888****************************** PP NAM 91 evlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ + +++glkktLvfy+grapkge+t+W+mheyr+ Ote100275050011\|100275050011 98 TIKSRksstsghsQAHAIGLKKTLVFYRGRAPKGERTNWIMHEYRA 143 9666655544445*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.348	7	162	IPR003441	NAC domain
SuperFamily	SSF101941	7.45E-44	18	150	IPR003441	NAC domain
Pfam	PF02365	8.4E-18	32	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MRVTTIVTVL EARKRIMEEI IHARRKLKIN GRHSAVEVIP EIDVCKWEPW DLPALSVIKS 60 DDPEWFFFCP RDKKYPNGYR SNRATEAGYW KATGKDRTIK SRKSSTSGHS QAHAIGLKKT 120 LVFYRGRAPK GERTNWIMHE YRATEPDLDG TGSGQASQIG FL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-35	18	146	28	145	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-35	18	146	28	145	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-35	18	146	28	145	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-35	18	146	28	145	NO APICAL MERISTEM PROTEIN
3swm_A	2e-35	18	146	31	148	NAC domain-containing protein 19
3swm_B	2e-35	18	146	31	148	NAC domain-containing protein 19
3swm_C	2e-35	18	146	31	148	NAC domain-containing protein 19
3swm_D	2e-35	18	146	31	148	NAC domain-containing protein 19
3swp_A	2e-35	18	146	31	148	NAC domain-containing protein 19
3swp_B	2e-35	18	146	31	148	NAC domain-containing protein 19
3swp_C	2e-35	18	146	31	148	NAC domain-containing protein 19
3swp_D	2e-35	18	146	31	148	NAC domain-containing protein 19
4dul_A	2e-35	18	146	28	145	NAC domain-containing protein 19
4dul_B	2e-35	18	146	28	145	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070419.1	5e-81	protein NTM1-like 9
Refseq	XP_011070420.1	5e-81	protein NTM1-like 9
Swissprot	F4JN35	6e-72	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A2Z4K547	3e-80	A0A2Z4K547_TECGR; NAC2 protein (Fragment)
STRING	Migut.A01059.1.p	2e-79	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14316	7	10

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]