PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100275050021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 200aa MW: 23035.1 Da PI: 9.5814

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100275050021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.8	6.3e-51	29	181	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....................kvkaeekewyfFsk 63 GfrF+Ptdeelv++yL+ k++g++ + evi+e+d++k+ePwdLp +k+++ ew+fF++ Ote100275050021\|100275050021 29 XGFRFRPTDEELVNHYLRLKINGRHSAV-EVIPEIDVCKWEPWDLPGmlfllysticslrfqiqslsVIKSDDPEWFFFCP 108 7**********************888.99***********5599*****999988876777888*** PP NAM 64 rdkkyatgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 rdkky++g r+nrat++gyWkatgkd++++s+ + +++glkktLvfy+grapkge+t+W+mheyr+ Ote100275050021\|100275050021 109 RDKKYPNGYRSNRATEAGYWKATGKDRTIKSRksstsghsQAHAIGLKKTLVFYRGRAPKGERTNWIMHEYRA 181 ***************************9666655544445*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-51	26	188	IPR003441	NAC domain
PROSITE profile	PS51005	48.782	27	200	IPR003441	NAC domain
Pfam	PF02365	4.9E-28	29	180	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0071470	Biological Process	cellular response to osmotic stress
GO:1900426	Biological Process	positive regulation of defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
LDSWVHAATX XXXXXXXXXX XXXXXXXXXG FRFRPTDEEL VNHYLRLKIN GRHSAVEVIP 60 EIDVCKWEPW DLPGMLFLLY STICSLRFQI QSLSVIKSDD PEWFFFCPRD KKYPNGYRSN 120 RATEAGYWKA TGKDRTIKSR KSSTSGHSQA HAIGLKKTLV FYRGRAPKGE RTNWIMHEYR 180 ATEPDLDGTG SGQASQIGFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-40	30	184	20	145	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-40	30	184	20	145	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-40	30	184	20	145	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-40	30	184	20	145	NO APICAL MERISTEM PROTEIN
3swm_A	3e-40	30	184	23	148	NAC domain-containing protein 19
3swm_B	3e-40	30	184	23	148	NAC domain-containing protein 19
3swm_C	3e-40	30	184	23	148	NAC domain-containing protein 19
3swm_D	3e-40	30	184	23	148	NAC domain-containing protein 19
3swp_A	3e-40	30	184	23	148	NAC domain-containing protein 19
3swp_B	3e-40	30	184	23	148	NAC domain-containing protein 19
3swp_C	3e-40	30	184	23	148	NAC domain-containing protein 19
3swp_D	3e-40	30	184	23	148	NAC domain-containing protein 19
4dul_A	3e-40	30	184	20	145	NAC domain-containing protein 19
4dul_B	3e-40	30	184	20	145	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00108	PBM	Transfer from AT4G35580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070419.1	1e-87	protein NTM1-like 9
Refseq	XP_011070420.1	1e-87	protein NTM1-like 9
Swissprot	F4JN35	1e-78	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A2Z4K547	2e-85	A0A2Z4K547_TECGR; NAC2 protein (Fragment)
TrEMBL	A0A2Z7CE79	7e-84	A0A2Z7CE79_9LAMI; Uncharacterized protein
STRING	Migut.A01059.1.p	7e-87	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14316	7	10

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]