PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100275430021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

M-type_MADS

Protein Properties

Length: 62aa MW: 7133.31 Da PI: 10.7049

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100275430021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.1	1.8e-31	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRr+g+lKKA+E+SvLCdaev +i+fs++gkl+eyss Ote100275430021\|100275430021 10 RIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVGLIVFSHKGKLFEYSS 59 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.268	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.8E-41	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-30	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.16E-37	2	61	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.4E-32	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.9E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.4E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.4E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MGRGKVELRR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVGLIVFSH KGKLFEYSSD 60 SW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	7e-21	1	59	1	59	MEF2C
5f28_B	7e-21	1	59	1	59	MEF2C
5f28_C	7e-21	1	59	1	59	MEF2C
5f28_D	7e-21	1	59	1	59	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1. {ECO:0000269\|PubMed:10765981}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007156376.1	1e-34	hypothetical protein PHAVU_003G2810000g, partial
Refseq	XP_017969958.1	2e-34	PREDICTED: truncated transcription factor CAULIFLOWER A isoform X2
Refseq	XP_021684192.1	5e-34	truncated transcription factor CAULIFLOWER A-like isoform X2
Swissprot	Q6R4R9	8e-35	CALA_BRAOB; Truncated transcription factor CAULIFLOWER A
TrEMBL	A0A2K3PNA9	1e-34	A0A2K3PNA9_TRIPR; Floral homeotic protein apetala 1-like
TrEMBL	A0A4D9BPT2	4e-34	A0A4D9BPT2_SALSN; MADS-box transcription factor, plant
STRING	XP_004144163.1	4e-33	(Cucumis sativus)
STRING	XP_004165502.1	4e-33	(Cucumis sativus)
STRING	XP_004172815.1	5e-34	(Cucumis sativus)
STRING	XP_007156376.1	4e-34	(Phaseolus vulgaris)
STRING	Migut.E00037.1.p	4e-33	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Publications ? help Back to Top
Li XF,Shen RJ,Liu PL,Tang ZC,He YK Molecular characters and morphological genetics of CAL gene in Chinese cabbage. Cell Res., 2000. 10(1): p. 29-38 [PMID:10765981]