PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100275550041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Whirly

Protein Properties

Length: 173aa MW: 19371.8 Da PI: 10.0151

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100275550041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	69.6	5.5e-22	33	87	1	55
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsf 55 svyk+kaal+v+++ p+f+ ldsg++kl+++G++ll++a+a ++r+ydW++kq++ Ote100275550041\|100275550041 33 SVYKGKAALTVEPRPPEFSPLDSGAFKLSKEGFILLQFAPASGVRQYDWGRKQVY 87 79***************************************************97 PP
2	Whirly	22	2.6e-07	144	172	110	138
Whirly 110 svtnslvkgnesfsvPvskaefavlrsll 138 v+n++ +++es+++P++kaefavl s + Ote100275550041\|100275550041 144 GVQNKIANVDESIYIPITKAEFAVLVSSF 172 599**********************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	1.9E-27	22	87	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	4.71E-32	26	173	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	6.8E-20	34	87	IPR013742	Plant transcription factor
Gene3D	G3DSA:2.30.31.10	9.5E-5	141	173	IPR009044	ssDNA-binding transcriptional regulator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MLLESWKKCI SFLSIFFICK TGQLPPRVYV GYSVYKGKAA LTVEPRPPEF SPLDSGAFKL 60 SKEGFILLQF APASGVRQYD WGRKQVYLSF ICNLCRYGSS KGISLKPTKM LIWLQFRPIV 120 IIGTGTSAQE TLVNSSMILI KERGVQNKIA NVDESIYIPI TKAEFAVLVS SFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1l3a_A	6e-44	22	173	32	181	p24: plant transcriptional regulator PBF-2
1l3a_B	6e-44	22	173	32	181	p24: plant transcriptional regulator PBF-2
1l3a_C	6e-44	22	173	32	181	p24: plant transcriptional regulator PBF-2
1l3a_D	6e-44	22	173	32	181	p24: plant transcriptional regulator PBF-2
4koq_A	3e-44	26	173	7	152	Single-stranded DNA-binding protein WHY3, chloroplastic
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269\|PubMed:10948264, ECO:0000269\|PubMed:12080340, ECO:0000269\|PubMed:14960277}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087065.2	1e-53	single-stranded DNA-binding protein WHY1, chloroplastic
Swissprot	Q9LL85	2e-43	WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBL	A0A2Z7DFX6	2e-54	A0A2Z7DFX6_9LAMI; DNA-binding protein p24
STRING	Migut.L01333.1.p	3e-50	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7731	24	30