PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100276010011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 108aa    MW: 12209.2 Da    PI: 7.7755
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100276010011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.69.2e-29893287
                        DUF260  2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84
                                  Ca Ck+l+r+C + C+lapyfp e++++f++vhk+FG sn++k++++++e+er +++++l+ eA++r+ d v+G+++v +kl 
  Ote100276010011|100276010011  8 CAICKHLGRQCDQTCILAPYFPIERAEEFQCVHKVFGLSNLTKIVSSVEENERATIVETLIIEAKMRLYDRVNGSLRVKKKLD 90
                                  *****************************************************************************999998 PP

                        DUF260 85 qql 87
                                   ++
  Ote100276010011|100276010011 91 CEY 93
                                  765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.926107IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-28891IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MDAAAPTCAI CKHLGRQCDQ TCILAPYFPI ERAEEFQCVH KVFGLSNLTK IVSSVEENER  60
ATIVETLIIE AKMRLYDRVN GSLRVKKKLD CEYGERIQLR QATAPLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-182987113LOB family transfactor Ramosa2.1
5ly0_B1e-182987113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846488.15e-26PREDICTED: LOB domain-containing protein 7-like
TrEMBLA0A022RYR61e-24A0A022RYR6_ERYGU; Uncharacterized protein
STRINGMigut.J00626.1.p2e-25(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752